PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK02019.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 106aa    MW: 12139.6 Da    PI: 10.8946
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK02019.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1003.2e-312410650125
        NAM  50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.......kgelvglkktLvfykgrapkgektdWvmhe 125
                 +k+++ ew+fF++rd+ky++g+r+nrat++gyWkatgkd+++ s+       ++ ++g+kktLvfy+grapkg++t+W+mhe
  PK02019.2  24 VIKTDDPEWFFFCPRDRKYPNGQRSNRATSAGYWKATGKDRTIRSRsyrsatnTTGAIGMKKTLVFYRGRAPKGVRTHWIMHE 106
                4667888**************************************987766555555*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.5961106IPR003441NAC domain
SuperFamilySSF1019411.26E-3024106IPR003441NAC domain
PfamPF023652.5E-1528106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MGYVVEAIFG TGSKXFELFT GLSVIKTDDP EWFFFCPRDR KYPNGQRSNR ATSAGYWKAT  60
GKDRTIRSRS YRSATNTTGA IGMKKTLVFY RGRAPKGVRT HWIMHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-263110672139NO APICAL MERISTEM PROTEIN
1ut4_B3e-263110672139NO APICAL MERISTEM PROTEIN
1ut7_A3e-263110672139NO APICAL MERISTEM PROTEIN
1ut7_B3e-263110672139NO APICAL MERISTEM PROTEIN
3swm_A3e-263110675142NAC domain-containing protein 19
3swm_B3e-263110675142NAC domain-containing protein 19
3swm_C3e-263110675142NAC domain-containing protein 19
3swm_D3e-263110675142NAC domain-containing protein 19
3swp_A3e-263110675142NAC domain-containing protein 19
3swp_B3e-263110675142NAC domain-containing protein 19
3swp_C3e-263110675142NAC domain-containing protein 19
3swp_D3e-263110675142NAC domain-containing protein 19
4dul_A3e-263110672139NAC domain-containing protein 19
4dul_B3e-263110672139NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104895.14e-51NAC domain-containing protein 78
SwissprotF4JN351e-41NTL9_ARATH; Protein NTM1-like 9
TrEMBLA0A060A6412e-51A0A060A641_BOENI; NAC domain-containing protein
TrEMBLW9RPS14e-51W9RPS1_9R
STRINGPOPTR_0001s45700.14e-44(Populus trichocarpa)
STRINGPOPTR_0011s15230.14e-44(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2174434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.38e-43NAC transcription factor-like 9